Blar i NTNU Open på forfatter "Schulz, Christian"
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Automated generation of genome-scale metabolic draft reconstructions based on KEGG
Karlsen, Emil; Schulz, Christian; Almaas, Eivind (Journal article; Peer reviewed, 2018)Background Constraint-based modeling is a widely used and powerful methodology to assess the metabolic phenotypes and capabilities of an organism. The starting point and cornerstone of all such modeling is a genome-scale ... -
Epidemic Network Modeling for the Prediction of the Transmission of Gonorrhea in Norway
Solnes, Sofie Grefsrud (Master thesis, 2018)The number of gonorrhea infections among men who have sex with men (MSM) in Norway continues to rise, and in 2017 the number of infections increased with more than 50 % relative to 2016. This has resulted in various campaigns ... -
Evaluation and improvement of shelf stability of New England IPAs - In terms of oxidative degradation
Loktu, Marius (Master thesis, 2022)I dagens marked selges som regel New England IPA med kort holdbarhet og anbefalinger om kald oppbevaring, da stilen tilsynelatende lett påvirkes av oksidasjon. Hovedmålet med denne oppgaven var å undersøke om enkelte ... -
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling
Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind (Peer reviewed; Journal article, 2022)Genome-scale metabolic models (GEMs) are mathematical representations of metabolism that allow for in silico simulation of metabolic phenotypes and capabilities. A prerequisite for these predictions is an accurate ... -
Exploring the in vivo and in silico behaviour of the synthetic methylotroph Bacillus subtilis 168 pBV2mp_mdhBm
Linn Sandvik (Master thesis, 2023)Bacillus subtilis er en type bakterie som er mye brukt som cellefabrikk i bioteknologisk industri (Su 2020). Bakterien kultiveres vanligvis med glukose som karbonkilde (Kleijn 2010), men det har oppstått en interesse for ... -
Foundation for massive-scale analysis of fermented beverages
Antonsen, Adrian (Master thesis, 2021)Brygging og konsum av øl er sentralt i svært mange kulturer, og er en av de eldste vedvarende formene for bioteknologi vi har. Det kommersielle markedet for øl er stort, med enormt mange ulike typer og stiler allerede i ... -
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind (Peer reviewed; Journal article, 2021)Genome-scale metabolic modeling is an important tool in the study of metabolism by enhancing the collation of knowledge, interpretation of data, and prediction of metabolic capabilities. A frequent assumption in the use ... -
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering
Schulz, Christian; Almaas, Eivind (Peer reviewed; Journal article, 2020)Approaches for systematizing information of relatedness between organisms is important in biology. Phylogenetic analyses based on sets of highly conserved genes are currently the basis for the Tree of Life. Genome-scale ... -
High-Resolution 1D 1H Nuclear Magnetic Resonance, Multivariate Analysis and Heteronuclear Single Quantum Coherence Spectroscopy for Comparing Different Sample Preparation Methods and Styles of Beer
Zotchev, Kristoffer (Master thesis, 2020)The consumption of beer is deeply embedded in Norwegian history, all the way back to when the vikings celebrated after a day of successful plundering. Worldwide, the variety of different kinds of beers is greatly increasing, ... -
Human Phenotype Prediction Through use of Variant Data in Metabolic Modeling
Landa, Sigve Strand (Master thesis, 2022)Føremålet med dette prosjektet var utvikling av ein metode for bruk av variasjonsdata til å selektere gen for fjerning i metabolsk modellering. Motivasjonen er moglegheita til å kunne oppdage sjukdomsframkallande variantar, ... -
Insights into the genome-scale metabolic modelling framework based on Pseudomonas taiwanensis VLB120
Schulz, Christian (Doctoral theses at NTNU;2021:153, Doctoral thesis, 2021)Any living organism - complex or single-cell - consists of multiple layers of inter connected components. This starts on an atomic scale all the way through enzymes and cells, and in some cases organs, to make up organisms, ... -
Measuring the Biomass Composition of Escherichia coli for Computational Applications
Bråtelund, Signe (Master thesis, 2021)Systembiologi er et felt som har fått økende oppmerksomhet gjennom de siste to tiårene. Feltet baserer seg på en holistisk tilnærming, der komplekse biologiske systemer studeres i sin helhet i stedet for å reduseres til ... -
Reconstruction of a genome-scale metabolic model for the analysis of the leaginous phenotype of Aurantiochytrium sp. T66
Simensen, Vetle (Master thesis, 2019)Thraustochytrider er heterotrofe protister som under bestemte betingelser akkumulerer store mengder triglyserider som er svært rike på omega-3-flerumettede fettsyrer. Det økende globale behovet for disse fettsyrene har ... -
A study of a diauxic growth experiment using an expanded dynamic flux balance framework
Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind (Journal article; Peer reviewed, 2023) -
The Biomass project
Bakke Dysterud, Ingeborg (Master thesis, 2022)Biomassen er mengden RNA, DNA, protein, lipid og karbohydrat i en organisme. Den varierer med vekstraten, men er konstant for forskjellige kilder av karboner ved lik vekstrate. I prosjektet vårt undersøkte vi om dette ... -
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk (Peer reviewed; Journal article, 2021)Palladium (Pd), due to its unique catalytic properties, is an industrially important heavy metal especially in the form of nanoparticles. It has a wide range of applications from automobile catalytic converters to the ...